**Discipline of [Computer Language Benchmarks Game].** ---- #!/usr/bin/tclsh # Fasta benchmark # # Contributed by Michael Schlenker foreach {IM IA IC last} {139968 3877 29573 42} break set alu GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGT append alu CAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCC append alu GGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCC append alu GGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACT append alu CCGTCTCAAAAA set iub {a 0.27 c 0.12 g 0.12 t 0.27 B 0.02 D 0.02 H 0.02 K 0.02 M 0.02 N 0.02 R 0.02 S 0.02 V 0.02 W 0.02 Y 0.02} set hsapiens {a 0.3029549426680 c 0.1979883004921 g 0.1975473066391 t 0.3015094502008} proc make_gen_random {} { set params [list IM $::IM IA $::IA IC $::IC] set body [string map $params { expr {($max * [set ::last [expr {($::last * IA + IC) % IM}]]) / IM}}] proc gen_random {max} $body } proc make_cumulative {table} { set prob 0.0 set pl [list] foreach {char p} $table {lappend pl [set prob [expr {$prob + $p}]] $char} return $pl } proc make_repeat_fasta {id desc src n} { foreach {width s e} {59 0 59} break puts ">$id $desc" set l [string length $src] set ls [string repeat $src [expr {([incr n -1] / $l)+1 }]] while {$e < $n} { puts [string range $ls $s $e] set s [incr e] incr e $width } puts [string range $ls $s $n] } proc make_random_fasta {id desc src n} { foreach {width line} {60 ""} break puts ">$id $desc" set prob [make_cumulative $src] for {set i 0} {$i < $n} {incr i} { set rand [gen_random 1.0] foreach {p c} $prob { if {$p > $rand} { append line $c break } } if {[string length $line] == $width} { puts $line set line "" } } if {[string length $line]} {puts $line} } proc main {n} { make_gen_random make_repeat_fasta ONE "Homo sapiens alu" $::alu [expr {$n*2}] make_random_fasta TWO "IUB ambiguity codes" $::iub [expr {$n*3}] make_random_fasta THREE "Homo sapiens frequency" $::hsapiens [expr {$n*5}] } set N [lindex $argv 0] if {$N < 1} {set N 1} main $N ---- !!!!!! %| [Category Performance] |% !!!!!!