| What: | tclfastme: tcl extension based on the FastME phylogenetic tree building program. |
| Where: | http://www.lbgi.fr/~moumou/ |
| Description: | Tcl binding for the FastME program [L1 ][L2 ]. This is a rough tcl-ification of the FastME program, all options are not implemented yet. |
| Updated: | 11/2014 |
| Contact: | luc.moulinier at unistra.fr |
Given a list of leaves, and the symmetrical distance matrix linking all the nodes, this extension will compute the corresponding tree using an algorithm based on Minimal Evolution.
The minimal form of the tclfastme command is :
fastme leavesList matrixList ?option value? ...
Given a list of leaves a,b,c, the matrix list is of the form :
set matrixList {d(a,a) d(a,b) d(a,c) d(b,a) d(b,b) d(b,c) d(c,a) d(c,b) d(c,c)}where d(a,b) is the distance between a and b, d(a,a) = 0.0.
Three options are currently available :
Please refer to the reference article for more details on the algorithm [L3 ].