Arjen Markus (12 june 2008) I have access to several online literature databases (yes, lucky me :)), one of them is ScienceDirect by Elsevier (I have no shares in that company, I just want to document where I got the information from). A search for articles mentioning "Tcl" in one way or another brings up a lot of titles. I have selected those that use "Tcl" in the sense that we like: Tool Command Language - you'd be surprised how many meanings these three letters have - total cooking loss, two component limit, T cell lines and transverse carpal ligament are but a few!
I did not go through the whole list, just the first 200 or so. Not all of them describe the use of Tcl in their work (some merely mention it). I selected only one by Clif Flynt and added two from beyond the first 200 that had familiar names. Here is the list:
Tensor3D: A computer graphics program to simulate 3D real-time deformation and visualization of geometric bodies Computers & Geosciences, Volume 34, Issue 7, July 2008, Pages 738-753 Luca Pallozzi Lavorante, Hans Dirk Ebert NMR experimental procedure for obtaining 3Q and 5QMAS spectra from the same multiplex SPAM acquisition Comptes Rendus Chimie, Volume 11, Issues 4-5, April-May 2008, Pages 380-386 Redouane Hajjar, Yannick Millot, Pascal P. Man An Automated Approach to NMR Data Handling for Compound Validation and Registration Journal of the Association for Laboratory Automation, Volume 13, Issue 2, April 2008, Pages 73-78 Alvin C. Bach II, Walter W. Massefski, James F. Mattes EMPIRE: Nuclear Reaction Model Code System for Data Evaluation Nuclear Data Sheets, Volume 108, Issue 12, December 2007, Pages 2655-2715 M. Herman, R. Capote, B.V. Carlson, P. Oblozinský, M. Sin, A. Trkov, H. Wienke, V. Zerkin Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton. BMC Genomics. 2007 Aug 29;8(1):294. Jean Muller, Mehlen A, Vetter G, Yatskou M, Muller A, Chalmel F, Poch O, Friederich E, Vallar L. Novel Software Automated Testing System Based on J2EE Tsinghua Science & Technology, Volume 12, Supplement 1, July 2007, Pages 51-56 Songwen Pei, Baifeng Wu, Kun Zhu, Qiang Yu Visualization of large data sets by mixing Tcl and C++ interfaces to the VTK library Computers & Structures, Volume 85, Issue 9, May 2007, Pages 536-552 Frédéric Magoulès, Roman Putanowicz An intelligent NC program processor for CNC system of machine tool Robotics and Computer-Integrated Manufacturing, Volume 23, Issue 2, April 2007, Pages 160-169 Yadong Liu, Xingui Guo, Wei Li, Kazuo Yamazaki, Keizo Kashihara, Makoto Fujishima ESPResSo - an extensible simulation package for research on soft matter systems Computer Physics Communications, Volume 174, Issue 9, 1 May 2006, Pages 704-727 H.J. Limbach, A. Arnold, B.A. Mann, C. Holm Sequence and Comparative Genomic Analysis of Actin-related Proteins. Molecular Biology Cell (2005). Jean Muller, Oma, Y., Vallar, L., Friederich, E., Poch, O., and Winsor, B. Interpretive OpenGL for computer graphics Computers & Graphics, Volume 29, Issue 3, June 2005, Pages 331-339 Bo Chen, Harry H. Cheng GEOSSAV: a simulation tool for subsurface applications Computers & Geosciences, Volume 30, Issue 3, April 2004, Pages 221-238 Christian Regli, Lukas Rosenthaler, Peter Huggenberger REDCAT: a residual dipolar coupling analysis tool Journal of Magnetic Resonance, Volume 167, Issue 2, April 2004, Pages 228-241 Homayoun Valafar, James H. Prestegard Visualisation of 4-D colour and power Doppler data Ultrasound in Medicine & Biology, Volume 29, Issue 12, December 2003, Pages 1735-1747 Mike G. Jones, Jacqueline A. Shipley, Teresa M. Robinson Automated scientific software scripting with SWIG Future Generation Computer Systems, Volume 19, Issue 5, July 2003, Pages 599-609 D.M. Beazley Are Scripting Languages Any Good? A Validation of Perl, Python, Rexx, and Tcl against C, C++, and Java Advances in Computers, Volume 57, 2003, Pages 205-270 Lutz Prechelt Tcl/Tk Features Tcl/Tk (Second Edition), 2003, Pages 1-17 Clif Flynt Developing a Simple NMR Interface: WWNMR Journal of the Association for Laboratory Automation, Volume 7, Issue 6, 1 December 2002, Pages 103-107 Alvin C. Bach II, David W. Cochran EMXtalOrg: an EM tilt data organization and processing system Ultramicroscopy, Volume 93, Issue 1, October 2002, Pages 11-17 Jason McDermott, Eric Barklis The design and implementation of the Redland RDF application framework Computer Networks, Volume 39, Issue 5, 5 August 2002, Pages 577-588 David Beckett Experience with SAND-Tcl: A Scripting Tool for Spatial Databases Journal of Visual Languages & Computing, Volume 13, Issue 2, April 2002, Pages 229-255 CLAUDIO ESPERANÇA, HANAN SAMET Automation of a procedure to find the polynomial which best fits (?, c1, c2, T) data of electrolyte solutions by non-linear regression analysis using ® software Computers & Chemistry, Volume 26, Issue 3, February 2002, Pages 253-264 E. Cortazar, A. Usobiaga, L. A. Fernández, A. de Diego, J. M. Madariaga Specification and Visualization of Anisotropic Interaction Tensors in Polypeptides and Numerical Simulations in Biological Solid-State NMR Journal of Magnetic Resonance, Volume 154, Issue 1, January 2002, Pages 28-45 Mads Bak, Robert Schultz, Thomas Vosegaard, Niels Chr. Nielsen Transcriber: Development and use of a tool for assisting speech corpora production Speech Communication, Volume 33, Issues 1-2, January 2001, Pages 5-22 Claude Barras, Edouard Geoffrois, Zhibiao Wu, Mark Liberman Multi-level annotation in the Emu speech database management system Speech Communication, Volume 33, Issues 1-2, January 2001, Pages 61-77 Steve Cassidy, Jonathan Harrington SIMPSON: A General Simulation Program for Solid-State NMR Spectroscopy Journal of Magnetic Resonance, Volume 147, Issue 2, December 2000, Pages 296-330 Mads Bak, Jimmy T. Rasmussen, Niels Chr. Nielsen Multi-agent approach to the planning of power transmission expansion Decision Support Systems, Volume 28, Issue 3, May 2000, Pages 279-290 Jerome Yen, Yonghe Yan, Javier Contreras, Pai-Chun Ma, Felix F. Wu Facial reconstruction using 3-D computer graphics Forensic Science International, Volume 108, Issue 2, 14 February 2000, Pages 81-95 P. Vanezis, M. Vanezis, G. McCombe, T. Niblett A New Automated Molecular Modeling Method to Locate Coke and to Follow Its Growth Inside Zeolite: Application to the Coke Formed during the Transformation of Toluene on H-MFI Journal of Catalysis, Volume 188, Issue 2, 10 December 1999, Pages 346-352 TCL/TK in a nutshell: A desktop quick reference : By Paul Raines and Jeff Tranter. O'Reilly, Sebastopol, CA. (1999). 440 pages. $24.95 Computers & Mathematics with Applications, Volume 38, Issues 5-6, September 1999, Page 255 Rough set extension of Tcl for data mining Knowledge-Based Systems, Volume 11, Issues 3-4, 12 November 1998, Pages 249-253 G. Griffin, Z. Chen Inter-site: a new tool for the simulation of spatially realistic population dynamics Ecological Modelling, Volume 113, Issues 1-3, 2 November 1998, Pages 125-139 F. Oliver Gathmann, D. Dudley Williams QVIEW: Software for Rapid Selection of Particles from Digital Electron Micrographs Journal of Structural Biology, Volume 123, Issue 1, September 1998, Pages 17-21 Alexandre K. Shah, Phoebe L. Stewart XML and the desperate Tel hacker Computer Networks and ISDN Systems, Volume 30, Issues 1-7, April 1998, Pages 713-715 Steve Ball Graphical user interfaces for numerical libraries Journal of Computational and Applied Mathematics, Volume 82, Issues 1-2, 15 September 1997, Pages 351-366 Venkat V. S. S. Sastry
Actually, I have written also some papers that mainly involve the Ellogon (http://www.ellogon.org/ ) platform:
P. Fragkou, G. Petasis, A. Theodorakos, V. Karkaletsis, and C. D. Spyropoulos, “BOEMIE ontology-based text annotation tool”. In Proceedings of the 6th Language Resources and Evaluation Conference (LREC 2008), Marrakech (Morocco), May 28 – 30, 2008. G. Petasis, P. Fragkou, A. Theodorakos, V. Karkaletsis, and C. D. Spyropoulos, “Segmenting HTML pages using visual and semantic information”. In Proceedings of the 4th Web as a Corpus Workshop (WAC2008), 6th Language Resources and Evaluation Conference (LREC 2008), Marrakech (Morocco), June 1, 2008. D. Spiliotopoulos, G. Petasis, and G. Kouroupetroglou, “Prosodically Enriched Text Annotation for High Quality Speech Synthesis”. In Proceedings of the 10th International Conference on Speech and Computer (SPECOM-2005), pp. 313 – 316, Patras, Greece, 17 – 19 October, 2005. G. Petasis, V. Karkaletsis, C. Grover, B. Hachey, M. T. Pazienza, M. Vindigni, J. Coch: “Adaptive, Multilingual Named Entity Recognition in Web Pages”. In Proceedings of the 16th European Conference on Artificial Intelligence (ECAI 2004), pp. 1073 – 1074, Valencia, Spain, August 22 – 27, 2004. G. Petasis, V. Karkaletsis, D. Farmakiotou, I. Androutsopoulos, and C.D. Spyropoulos. “A Greek Morphological Lexicon and its Exploitation by Natural Language Processing Applications”. In Lecture Notes on Computer Science (LNCS), vol. 2563, "Advances in Informatics - Post-proceedings of the 8th Panhellenic Conference in Informatics", Springer Verlag, pp. 401 – 419, 2003. (http://www.springerlink.com/content/hcdjrlvj5nlybf5c/ ) G. Petasis, V. Karkaletsis, G. Paliouras and C. D. Spyropoulos, “Using the Ellogon Natural Language Engineering Infrastructure”. In Proceedings of the Workshop on Balkan Language Resources and Tools, 1st Balkan Conference in Informatics (BCI’2003), Thessaloniki, Greece, November 21, 2003. (http://www.iit.demokritos.gr/skel/bci03_workshop/papers/SESSION5_2-23_Petasis.pdf ) G. Petasis, V. Karkaletsis, and C. D. Spyropoulos, “Cross-lingual Information Extraction from Web pages: the use of a general-purpose Text Engineering Platform”. In Proceedings of the 4th International Conference on Recent Advances in Natural Language Processing (RANLP 2003), Borovets, Bulgaria, pp 381 – 388, September 10 – 12, 2003. G. Petasis, V. Karkaletsis, G. Paliouras, I. Androutsopoulos and C. D. Spyropoulos, “Ellogon: A New Text Engineering Platform”. In Proceedings of the 3rd International Conference on Language Resources and Evaluation (LREC 2002), Las Palmas, Canary Islands, Spain, vol. I, pp. 72 – 78, May 2002.
At the risk of a bit of self-citation, here are a few more, with a boring assortment of authors and venues. The last one has been cited well over 500 times at look.
B.H. Toby, "CMPR - a powder diffraction toolkit". Journal of Applied Crystallography. 38(6): p. 1040-1 (2005). B.H. Toby, "Inspecting Rietveld Fits from pdCIF: pdCIFplot". Journal of Applied Crystallography. 36(5): p. 1285-7 (2003). B.H. Toby, "EXPGUI, a Graphical User Interface for GSAS". Journal of Applied Crystallography. 34: p. 210-3 (2001).